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FiberVISH 0.2
Fish - The Fiber Bundle API for the Vish Visualization Shell
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This is the complete list of members for Fiber::MDHistory, including all inherited members.
| addEdgesPerVertex(const RefPtr< Grid > &G, const RefPtr< Field > &theField) (defined in Fiber::Edges) | Fiber::Edges | static |
| addVerticesPerEdgeArray(const RefPtr< Grid > &G, const RefPtr< EdgesArray_t > &Data) | Fiber::Edges | static |
| addVerticesPerEdgeArray(const RefPtr< Grid > &G, const RefPtr< MemCore::TypedChunk< EdgeCell_t > > &EdgeData) (defined in Fiber::Edges) | Fiber::Edges | inlinestatic |
| addVerticesPerEdgeField(const RefPtr< Grid > &G, const RefPtr< Field > &theField) | Fiber::Edges | static |
| assign(const RefPtr< Grid > &theGrid) (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| assignStrong(const DynPtr_t &other) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| assignStrong(const ReferenceBase< ObjectBase_t > *Obj) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| assignStrong(const std::nullptr_t &) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| assignWeak(const WeakPtr &other) | MemCore::WeakPtr< class Object, class ObjectBase > | |
| AtomType_t typedef (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| AtomTypes (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| CartesianPositions (defined in Fiber::GridWithCartesianVertices) | Fiber::GridWithCartesianVertices | |
| CartesianVertices | Fiber::GridWithCartesianVertices | |
| CoordsArray_t typedef (defined in Fiber::Edges) | Fiber::Edges | |
| CoordsMemArray_t typedef (defined in Fiber::Edges) | Fiber::Edges | |
| CoordsMultiArray_m_t typedef (defined in Fiber::Edges) | Fiber::Edges | |
| create(Grid &myGrid, int Dims, const RefPtr< Field > &Positions) (defined in Fiber::GridWithCartesianVertices) | Fiber::GridWithCartesianVertices | inlinestatic |
| createDihedralPositionsField(const RefPtr< Grid > &grid) (defined in Fiber::MDHistory) | Fiber::MDHistory | static |
| createEdgesPerVertex(const RefPtr< Grid > &G, bool storeThem) | Fiber::Edges | static |
| DihedralPositions (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| DihedralsAsVertices (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| DihedralSkeleton (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| DynPtr(const DynPtr< AnyObject, ObjectBase > &Other) noexcept | MemCore::DynPtr< class Object, class ObjectBase > | protected |
| DynPtr(const std::nullptr_t &) noexcept | MemCore::DynPtr< class Object, class ObjectBase > | protected |
| EdgeCell_t typedef (defined in Fiber::Edges) | Fiber::Edges | |
| Edges(const RefPtr< Grid > &G) | Fiber::Edges | |
| EdgesArray_t typedef (defined in Fiber::Edges) | Fiber::Edges | |
| EdgeSkeleton (defined in Fiber::Edges) | Fiber::Edges | |
| EdgeSkeletonID() | Fiber::Edges | inlinestatic |
| EdgesPerVertex_t typedef | Fiber::Edges | |
| EdgesPerVertexMemArray_t typedef (defined in Fiber::Edges) | Fiber::Edges | |
| extractChains(const std::vector< string > &atom_filter, unsigned mindepth, unsigned maxdepth, std::vector< std::list< uint32_t > > &AllChains, std::vector< string > &dict_arr, MultiArray< 1, MDHistory::AtomType_t > &type_arr, MultiArray< 1, EdgeCell32 > &edge_arr) const (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| extractSingleCluster(uint32_t root, const std::vector< string > &atom_filter, unsigned maxdepth, std::list< uint32_t > &cluster, std::vector< string > &dict_arr, MultiArray< 1, MDHistory::AtomType_t > &type_arr, MultiArray< 1, EdgeCell32 > &edge_arr) const (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| getAtomTypeNames(std::vector< string > &names, const RefPtr< FragmentID > &frag=NullPtr()) const (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| getDihedrals(const RefPtr< FragmentID > &frag=NullPtr()) (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| getDihedralSkeletonID() (defined in Fiber::MDHistory) | Fiber::MDHistory | static |
| getDynPtr() const noexcept | MemCore::DynPtr< class Object, class ObjectBase > | |
| getEdgeSkeleton(const RefPtr< Grid > &G, bool CreateIfNotFound) | Fiber::Edges | static |
| getEdgesPerVertex(const RefPtr< Grid > &G, bool CreateIfNotFound) | Fiber::Edges | static |
| getEdgesPerVertexArray(const RefPtr< Grid > &G) (defined in Fiber::Edges) | Fiber::Edges | static |
| getEdgesPerVertexField(const RefPtr< Grid > &G, bool CreateIfNotFound) (defined in Fiber::Edges) | Fiber::Edges | static |
| getNullPtr() noexcept | MemCore::DynPtr< class Object, class ObjectBase > | static |
| getPtrValue() const | MemCore::WeakPtr< class Object, class ObjectBase > | |
| getType() const noexcept | MemCore::DynPtr< class Object, class ObjectBase > | |
| getVerticesPerEdge(const RefPtr< Grid > &G, bool CreateIfNotFound) | Fiber::Edges | static |
| getVerticesPerEdgeArray(const RefPtr< Grid > &G) | Fiber::Edges | static |
| getVerticesPerEdgeField(const RefPtr< Grid > &G) | Fiber::Edges | static |
| GridWithCartesianVertices(const RefPtr< Grid > &theGrid=nullptr) (defined in Fiber::GridWithCartesianVertices) | Fiber::GridWithCartesianVertices | inline |
| ID() | Fiber::Edges | inlinestatic |
| IndexSetArray_t typedef (defined in Fiber::Edges) | Fiber::Edges | |
| invalidate() | Fiber::TypedGrid | inline |
| isAssignable(const DynPtr< ObjectBase, ObjectBase > &Other) const noexcept | MemCore::DynPtr< class Object, class ObjectBase > | |
| isMember(const T &str, const C &atom_filter) const (defined in Fiber::MDHistory) | Fiber::MDHistory | inline |
| isValid() (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| isValid() const (defined in Fiber::GridWithCartesianVertices) | Fiber::GridWithCartesianVertices | inline |
| MDHistory(const RefPtr< Grid > &grid) (defined in Fiber::MDHistory) | Fiber::MDHistory | inline |
| object_t typedef | MemCore::WeakPtr< class Object, class ObjectBase > | |
| ObjectBase_t typedef | MemCore::StrongPtr< class Object, class ObjectBase > | |
| operator void *() const noexcept | MemCore::DynPtr< class Object, class ObjectBase > | |
| operator!() const noexcept | MemCore::DynPtr< class Object, class ObjectBase > | |
| operator()(Arguments...parameters) const -> decltype((*this->getPtrValue())(parameters...)) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| operator*() const | MemCore::StrongPtr< class Object, class ObjectBase > | |
| operator->() const | MemCore::StrongPtr< class Object, class ObjectBase > | |
| operator=(const DynPtr_t &other) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| operator=(const ReferenceBase< ObjectBase_t > *Obj) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| operator=(const std::initializer_list< StrongPtr > &other) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| operator=(const std::nullptr_t &) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| operator=(const StrongPtr &other) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| MemCore::WeakPtr::operator=(const WeakPtr &other) | MemCore::WeakPtr< class Object, class ObjectBase > | |
| operator[](const IndexType &I) const -> decltype((*this->getPtrValue())[I]) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| operator~() const | MemCore::WeakPtr< class Object, class ObjectBase > | |
| pointer_t typedef | MemCore::WeakPtr< class Object, class ObjectBase > | |
| recursiveChainFinder(std::list< uint32_t > &chain, const std::vector< std::list< uint32_t > > &neighbors, std::vector< std::list< uint32_t > > &AllChains, unsigned mindepth, unsigned maxdepth, std::vector< string > &dict_arr, MultiArray< 1, MDHistory::AtomType_t > &type_arr, const std::vector< string > &atom_filter) const (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| recursiveClusterFinder(std::list< uint32_t > &cluster, uint32_t node, const std::vector< std::list< uint32_t > > &neighbors, unsigned maxdepth, std::vector< string > &dict_arr, MultiArray< 1, MDHistory::AtomType_t > &type_arr, const std::vector< string > &atom_filter) const (defined in Fiber::MDHistory) | Fiber::MDHistory | |
| refvalue_t typedef | MemCore::WeakPtr< class Object, class ObjectBase > | |
| Speak(const char *s, const char *prefix="") const | MemCore::DynPtr< class Object, class ObjectBase > | |
| speak(const char *s, const char *prefix="") const noexcept | MemCore::DynPtr< class Object, class ObjectBase > | |
| StrongPtr() | MemCore::StrongPtr< class Object, class ObjectBase > | |
| StrongPtr(const ReferenceBase< ObjectBase_t > *Obj) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| StrongPtr(const ReferenceBase< ObjectBase_t > *Obj, const NotNullPtr &) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| StrongPtr(const std::nullptr_t &) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| StrongPtr(const StrongPtr< ChildObject, ObjectBase > &Other) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| StrongPtr(const StrongPtr< Object, ObjectBase > &Other) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| StrongPtr(const WeakPtr< ChildObject, ObjectBase_t > &Other) | MemCore::StrongPtr< class Object, class ObjectBase > | |
| TangentialVector_t typedef (defined in Fiber::Edges) | Fiber::Edges | |
| TriangleCell_t typedef (defined in Fiber::Edges) | Fiber::Edges | |
| TriArray_t typedef (defined in Fiber::Edges) | Fiber::Edges | |
| Vertices (defined in Fiber::GridWithCartesianVertices) | Fiber::GridWithCartesianVertices | |
| VerticesPerEdge (defined in Fiber::Edges) | Fiber::Edges | |
| VerticesPerEdgeArray (defined in Fiber::Edges) | Fiber::Edges | |
| VerticesPerEdgeField (defined in Fiber::Edges) | Fiber::Edges | |
| WeakPtr(Object *that, const SelfInitialize &) | MemCore::WeakPtr< class Object, class ObjectBase > | protected |
| WeakPtr() | MemCore::WeakPtr< class Object, class ObjectBase > | |
| WeakPtr(const std::nullptr_t &) | MemCore::WeakPtr< class Object, class ObjectBase > | |
| WeakPtr(const ReferenceBase< ObjectBase > *Obj) | MemCore::WeakPtr< class Object, class ObjectBase > | |
| WeakPtr(const ReferenceBase< ObjectBase > *Obj, const NotNullPtr &) | MemCore::WeakPtr< class Object, class ObjectBase > | |
| WeakPtr(const WeakPtr< AnyObject, ObjectBase > &Other) | MemCore::WeakPtr< class Object, class ObjectBase > | |
| WeakPtr(const WeakPtr &Other) | MemCore::WeakPtr< class Object, class ObjectBase > | |
| ~Edges() | Fiber::Edges | |
| ~GridWithCartesianVertices() (defined in Fiber::GridWithCartesianVertices) | Fiber::GridWithCartesianVertices | |
| ~StrongPtr() | MemCore::StrongPtr< class Object, class ObjectBase > | |
| ~TypedGrid() (defined in Fiber::TypedGrid) | Fiber::TypedGrid | |
| ~WeakPtr() | MemCore::WeakPtr< class Object, class ObjectBase > |
1.9.8